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From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints

, , , , , , , and . PLoS Comput. Biol., 13 (4): e1005409 (April 2017)

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Designing optimal cell factories: integer programing couples elementary mode analysis with regulation, and . BMC Systems Biology, 6 (1): 103+ (2012)Design of optimally constructed metabolic networks of minimal functionality., , and . PloS one, (2014)Predicting genetic engineering targets with Elementary Flux Mode Analysis: a review of four current methods., , and . New biotechnology, (Apr 24, 2015)Comparison and improvement of algorithms for computing minimal cut sets., , , and . BMC Bioinform., (2013)Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets., , , , and . EUSIPCO, page 1-5. IEEE, (2013)Elementary flux modes in a nutshell: Properties, calculation and applications, , , and . Biotechnol. J., (2013)Designing Optimized Production Hosts by Metabolic Modeling., , , , , and . Methods in molecular biology (Clifton, N.J.), (2018)From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints, , , , , , , and . PLOS Computational Biology, 13 (4): e1005409+ (Apr 13, 2017)Fast computation of minimal cut sets in metabolic networks with a Berge algorithm that utilizes binary bit pattern trees., , and . IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, 10 (5): 1329--1333 (2013)Which sets of elementary flux modes form thermodynamically feasible flux distributions?, , , and . FEBS J., 283 (9): 1782--1794 (May 2016)