( en | de | ru )

 

Disambiguierung von "Leek, Jeffrey T."

Autor der Publikation

KopierenLöschenDiese Publikation zur Ablage hinzufügen
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies.

, , , , und . Source Code for Biology and Medicine, (2013)

Bitte wählen Sie eine Person um die Publikation zuzuordnen

Um zwischen Personen mit demselben Namen zu unterscheiden, wird der akademische Grad und der Titel einer wichtigen Publikation angezeigt. Zudem lassen sich über den Button neben dem Namen einige der Person bereits zugeordnete Publikationen anzeigen.

Jeffrey T Rahn

Judith Leek

Elisabeth Leeker

Hubert Leeker

Maren Leeker

 

Weitere Publikationen von Autoren mit dem selben Namen

Rail-RNA: scalable analysis of RNA-seq splicing and coverage., , , , , , , , und . Bioinform., 33 (24): 4033-4040 (2017)Ballgown bridges the gap between transcriptome assembly and expression analysis, , , , , und . Nat Biotech, 33 (3): 243--246 (März 2015)Cloud-scale RNA-sequencing differential expression analysis with Myrna., , und . Genome Biol, 11 (8): R83 (2010)differential gene expression is studied "The Myrna pipeline is complementary to existing approaches for RNA-Seq analysis - like ERANGE and Cufflinks. ERANGE attempts to recover junction reads based on the uniquely aligned reads, but only reports RPKM and does not calculate a measure of statistical significance 36 . Cufflinks is more ambitious in its attempt to fully assemble the transcriptome, but bases its differential expression statistics on the Poisson model, which we have shown may not be appropriate for biological replicates 8 . Myrna focuses on the somewhat simpler problem of differential expression analysis between genes, but uses more sophisticated statistical models and integrates the analysis in a computationally efficient pipeline. " "The version of Myrna described here does not make any special attempt to align reads across exon junctions, but this is important future work. Expression signal may be lost by failing to align junction reads; Myrna's focus on just the constitutive portions of genes avoids between-sample or between-gene biases due to this policy. Users can trade off between loss of signal due to junction reads and loss of signal due to repetitive reads by adjusting the -truncate-reads option, which trims all input reads down to a given fixed length before passing them on to the alignment step. We expect that future support for counting junction reads will not severely impact Myrna's performance characteristics; its chief impact will be to add computation to the Align stage, which is currently both the biggest bottleneck and the most easily parallelizable step. ".The tspair package for finding top scoring pair classifiers in R.. Bioinform., 25 (9): 1203-1204 (2009)Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?, , , , , , , , , und 17 andere Autor(en). (2023)cite arxiv:2306.03255Comment: 25 total pages (17 pages for manuscript and 8 pages for the supplement). There are 2 figures.ari: The Automated R Instructor., , und . R J., 12 (1): 258 (2020)Empirical estimates suggest most published research is true, und . Biostatistics, 15 (1): 1--12 (2014)Tackling the widespread and critical impact of batch effects in high-throughput data., , , , , , , , und . Nat Rev Genet, 11 (10): 733--739 (Oktober 2010)Statistics: P values are just the tip of the iceberg., und . Nature, 520 (7549): 612 (2015)SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies., , , , und . Source Code for Biology and Medicine, (2013)