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PREDICT: a method for inferring novel drug indications with application to personalized medicine., , , and . Molecular systems biology, (Jun 7, 2011)Fast and Accurate Alignment of Multiple Protein Networks., , and . RECOMB, volume 4955 of Lecture Notes in Computer Science, page 246-256. Springer, (2008)A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer., , , , , and . RECOMB, volume 11467 of Lecture Notes in Computer Science, page 243-255. Springer, (2019)A Robustness Analysis of Dynamic Boolean Models of Cellular Circuits., and . J. Comput. Biol., 27 (2): 133-143 (2020)Approximation Algorithms and Hardness Results for Shortest Path Based Graph Orientations., , and . CPM, volume 7354 of Lecture Notes in Computer Science, page 70-82. Springer, (2012)BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract)., , , , and . RECOMB, volume 10229 of Lecture Notes in Computer Science, page 370-371. (2017)A Mixture Model for Signature Discovery from Sparse Mutation Data., , , and . RECOMB, volume 12074 of Lecture Notes in Computer Science, page 271-272. Springer, (2020)EXPANDER - an integrative program suite for microarray data analysis., , , , , , , and . BMC Bioinform., (2005)A Linearized Constraint-Based Approach for Modeling Signaling Networks., , and . J. Comput. Biol., 19 (2): 232-240 (2012)A Robustness Analysis of Dynamic Boolean Models of Cellular Circuits., and . ISBRA, volume 11490 of Lecture Notes in Computer Science, page 183-195. Springer, (2019)