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Computational Methods Used to Explore Transport Events in Biological Systems., и . J. Chem. Inf. Model., 59 (5): 1772-1781 (2019)RedMD - Reduced molecular dynamics package., , , и . J. Comput. Chem., 30 (14): 2364-2373 (2009)Coarse-grained force field for the nucleosome from self-consistent multiscaling., , , , , и . J. Comput. Chem., 29 (9): 1429-1439 (2008)Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site., , и . PLoS Comput. Biol., (2011)Dependency Map of Proteins in the Small Ribosomal Subunit., , и . PLoS Comput. Biol., (2006)Brownian dynamics simulations on CPU and GPU with BD_BOX., , и . J. Comput. Chem., 32 (12): 2734-2744 (2011)Exploring Global Motions and Correlations in the Ribosome, , и . J. Am. Chem. Soc., (2005)Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli., и . PLoS Comput. Biol., (2021)Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli., и . PLoS Comput. Biol., (2020)Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA., , , и . EvoBio, том 6623 из Lecture Notes in Computer Science, стр. 147-152. Springer, (2011)