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On schemes of combinatorial transcription logic, , and . Proceedings of the National Academy of Sciences, 100 (9): 5136--5141 (2003)A Statistical Theory of Sequence Alignment with Gaps., , and . ISMB, page 52-58. AAAI, (1998)Transcriptional regulation by the numbers: applications, , , , , , , and . Current Opinion in Genetics & Development, 15 (2): 125--135 (April 2005)Bacterial growth laws and their applications, and . Current Opinion in Biotechnology, 22 (4): 559--565 (Aug 16, 2011)Interdependence of Cell Growth and Gene Expression: Origins and Consequences, , , , and . Science, 330 (6007): 1099--1102 (Nov 19, 2010)A growth-rate composition formula for the growth of E. coli on co-utilized carbon substrates, , , , and . Mol. Syst. Biol., (2015)Constrained Allocation Flux Balance Analysis., , , , and . PLoS Comput. Biol., (2016)Identification of direct residue contacts in protein--protein interaction by message passing, , , , and . Proceedings of the National Academy of Sciences, 106 (1): 67--72 (2009)Emergence of robust growth laws from optimal regulation of ribosome synthesis, , , and . Mol. Syst. Biol., (2014)Growth rate-dependent global effects on gene expression in bacteria, , and . Cell, (2009)