peter.ralph | BibSonomy

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1BEopt: Building Energy Optimization Tool
http://nrel.gov/buildings/beopt.html
3 days ago by @peter.ralph
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resources
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1Oregon Hikers
https://www.oregonhikers.org/
16 days ago by @peter.ralph
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trip_reports
trip_reports
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1Long-term snake population data
https://pasta.lternet.edu/package/metadata/eml/edi/637/1
20 days ago by @peter.ralph
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data_source
demographics
long-term_study
mark-recapture
snakes
data_sourcedemographicslong-term_studymark-recapturesnakes
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2DLMF: NIST Digital Library of Mathematical Functions
https://dlmf.nist.gov/
a year ago by @peter.ralph
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reference
special_functions
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1Indigenous Placenames in Northern California
https://irows.ucr.edu/cd/appendices/b6/b6app3.htm
a year ago by @peter.ralph
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wintu
wintu
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1Looking forwards and backwards: Dynamics and genealogies of locally regulated populations
A. Etheridge, T. Kurtz, I. Letter, P. Ralph, and T. Lung. Electronic Journal of Probability, 29 (none): 1 -- 85 (2024)
6 hours ago by @peter.ralph
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myown
myown
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1Evolutionary Consequences of Seasonal Migration in North American Birds
T. Pegan. (2023)
a day ago by @peter.ralph
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birds
inversions
isolation_by_distance
passarines
birdsinversionsisolation_by_distancepassarines
(0)
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1Diversity begets stability: Sublinear growth and competitive coexistence across ecosystems
I. Hatton, O. Mazzarisi, A. Altieri, and M. Smerlak. Science, 383 (6688): eadg8488 (2024)
2 days ago by @peter.ralph
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Lotka_Volterra
coexistence_theory
density_dependence
Lotka_Volterracoexistence_theorydensity_dependence
(0)
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1From competition to facilitation and mutualism: a general theory of the niche
T. Koffel, T. Daufresne, and C. Klausmeier. Ecological Monographs, 91 (3): e01458 (2021)
2 days ago by @peter.ralph
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coexistence
coexistence_theory
facilitation
niche_modeling
species_distribution
coexistencecoexistence_theoryfacilitationniche_modelingspecies_distribution
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1How does facilitation influence the outcome of species interactions?
S. Hart. Journal of Ecology, 111 (10): 2094-2104 (2023)
2 days ago by @peter.ralph
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coexistence
coexistence_theory
facilitation
review
species_interaction
coexistencecoexistence_theoryfacilitationreviewspecies_interaction
(0)
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1Plant interaction networks reveal the limits of our understanding of diversity maintenance
M. Bimler, D. Stouffer, T. Martyn, and M. Mayfield. Ecology Letters, 27 (2): e14376 (2024)
2 days ago by @peter.ralph
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coexistence
interaction_matrix
interaction_networks
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coexistenceinteraction_matrixinteraction_networksspecies_interactions
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1Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency
M. Bimler, D. Stouffer, H. Lai, and M. Mayfield. Journal of Ecology, 106 (5): 1839-1852 (2018)
2 days ago by @peter.ralph
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coexistence
ecological_context
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coexistenceecological_contextfacilitationspecies_interactions
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1Addressing context dependence in ecology
J. Catford, J. Wilson, P. Pyšek, P. Hulme, and R. Duncan. Trends in Ecology & Evolution, 37 (2): 158-170 (2022)
2 days ago by @peter.ralph
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ecological_contextecologyreviewspecies_interactions
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1Integrated community models: A framework combining multispecies data sources to estimate the status, trends and dynamics of biodiversity
E. Zipkin, J. Doser, C. Davis, W. Leuenberger, S. Ayebare, and K. Davis. Journal of Animal Ecology, 92 (12): 2248-2262 (2023)
2 days ago by @peter.ralph
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community_dynamics
integrated_population_models
population_modeling
statistics
community_dynamicsintegrated_population_modelspopulation_modelingstatistics
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1Integrated Population Models: Achieving Their Potential
F. Frost, R. McCrea, R. King, O. Gimenez, and E. Zipkin. Journal of Statistical Theory and Practice, 17 (1): 6 (Nov 15, 2022)
2 days ago by @peter.ralph
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integrated_population_models
population_modeling
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integrated_population_modelspopulation_modelingstatistics
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1Using a Coupled Integral Projection Model to Investigate Interspecific Competition During an Invasion: An Application to Silver Carp (Hypophthalmichthys molitrix) and Gizzard Shad (Dorosoma cepedianum)
J. Peirce, G. Sandland, D. Schumann, H. Thompson, and R. Erickson. Letters in Biomathematics, 10 (1): 175–184 (2023, 2024)
2 days ago by @peter.ralph
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integral_projection_model
species_interactions
integral_projection_modelspecies_interactions
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1Integral Projection Models for Species with Complex Demography.
S. Ellner, and M. Rees. The American Naturalist, 167 (3): 410-428 (2006)
2 days ago by @peter.ralph
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demographic_models
integral_projection_model
thistles
demographic_modelsintegral_projection_modelthistles
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1Importance of individual and environmental variation for invasive species spread: a spatial integral projection model
E. Jongejans, K. Shea, O. Skarpaas, D. Kelly, and S. Ellner. Ecology, 92 (1): 86-97 (2011)
2 days ago by @peter.ralph
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individual_based_model
integral_projection_model
invasion_speed
invasions
spatial_models
wave_speed
individual_based_modelintegral_projection_modelinvasion_speedinvasionsspatial_modelswave_speed
(0)
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1Estimating interaction strengths for diverse horizontal systems using performance data
M. Bimler, M. Mayfield, T. Martyn, and D. Stouffer. Methods in Ecology and Evolution, 14 (3): 968-980 (2023)
4 days ago by @peter.ralph
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coexistence
density_dependence
methods
coexistencedensity_dependencemethods
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1Disentangling key species interactions in diverse and heterogeneous communities: A Bayesian sparse modelling approach
C. Weiss-Lehman, C. Werner, C. Bowler, L. Hallett, M. Mayfield, O. Godoy, L. Aoyama, G. Barabás, C. Chu, E. Ladouceur and 2 other author(s). Ecology Letters, 25 (5): 1263-1276 (2022)
4 days ago by @peter.ralph
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Beverton-Holt
coexistence
methods
shrinkage
species_interactions
Beverton-Holtcoexistencemethodsshrinkagespecies_interactions
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1Precision of Population Viability Analysis
S. Ellner, J. Fieberg, D. Ludwig, and C. Wilcox. Conservation Biology, 16 (1): 258--261 (2002)
4 days ago by @peter.ralph
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population_viability_analysis
review
population_viability_analysisreview
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1Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs
M. Chase, H. Ellegren, and C. Mugal. Evolution, 75 (9): 2179-2196 (September 2021)
5 days ago by @peter.ralph
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flycatchers
landscape_genomics
landscape_of_divergence
flycatcherslandscape_genomicslandscape_of_divergence
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1Identification of Tricyclic Guanidino Compounds from the Tetrodotoxin-Bearing Newt Taricha granulosa
Y. Kudo, C. Hanifin, and M. Yotsu-Yamashita. Organic Letters, 23 (9): 3513-3517 (2021)
20 days ago by @peter.ralph
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biosynthesis
newts
tetrodotoxin
biosynthesisnewtstetrodotoxin
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1No evidence for an endosymbiotic bacterial origin of tetrodotoxin in the newt Taricha granulosa
E. Lehman, J. Brodie, Edmund D, and 3. Brodie, Edmund D. Toxicon : official journal of the International Society on Toxinology, 44 (3): 243--249 (September 2004)
20 days ago by @peter.ralph
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newts
tetrodotoxin
newtstetrodotoxin
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1An amphibian chemical defense phenotype is inducible across life history stages
G. Bucciarelli, H. Shaffer, D. Green, and L. Kats. Scientific Reports, 7 (1): 8185 (Aug 15, 2017)
20 days ago by @peter.ralph
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coevolution
newts
tetrodotoxin
coevolutionnewtstetrodotoxin
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1A discrete stage-structured model of California newt population dynamics during a period of drought
M. Jones, W. Milligan, L. Kats, T. Vandergon, R. Honeycutt, R. Fisher, C. Davis, and T. Lucas. Journal of Theoretical Biology, (2017)
20 days ago by @peter.ralph
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Taricha
newt
population_density
population_dynamics
population_model
stage-structured
Tarichanewtpopulation_densitypopulation_dynamicspopulation_modelstage-structured
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1Population Subdivision and Genetic Divergence in the Red-Bellied Newt, Taricha rivularis
D. Hedgecock. Evolution, 32 (2): 271--286 (1978)
20 days ago by @peter.ralph
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home_range
isolation_by_distance
newts
population_density
home_rangeisolation_by_distancenewtspopulation_density
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1Abundance and sexual size dimorphism of the giant gartersnake (Thamnophis gigas) in the Sacramento Valley of California
G. Wylie, M. Casazza, C. Gregory, and B. Halstead. Journal of Herpetology, 44 (1): 94--103 (2010)
20 days ago by @peter.ralph
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Thamnophis
garter_snakes
population_density
Thamnophisgarter_snakespopulation_density
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1Garter snake population dynamics from a 16-year study: Considerations for ecological monitoring
A. Lind, H. Welsh Jr., and D. Tallmon. Ecological Applications, 15 (1): 294-303 (2005)
20 days ago by @peter.ralph
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Thamnophis
garter_snakes
mark-recapture
population_density
Thamnophisgarter_snakesmark-recapturepopulation_density
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1The evolutionary response of predators to dangerous prey: hotspots and coldspots in the geographic mosaic of coevolution between garter snakes and newts
E. Brodie, Jr, B. Ridenhour, and E. Brodie, 3rd. Evolution; international journal of organic evolution, 56 (10): 2067--2082 (October 2002)
21 days ago by @peter.ralph
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coevolution
garter_snakes
geographic_mosaic
newts
spatial_variation
tetrodotoxin
coevolutiongarter_snakesgeographic_mosaicnewtsspatial_variationtetrodotoxin
(0)
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1Gene Conversion Facilitates the Adaptive Evolution of Self-Resistance in Highly Toxic Newts
K. Gendreau, A. Hornsby, M. Hague, and J. McGlothlin. Molecular Biology and Evolution, 38 (10): 4077-4094 (June 2021)
21 days ago by @peter.ralph
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gene_conversion
newts
tetrodotoxin
gene_conversionnewtstetrodotoxin
(0)
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1Sex linkage of the skeletal muscle sodium channel gene (SCN4A) explains apparent deviations from Hardy--Weinberg equilibrium of tetrodotoxin-resistance alleles in garter snakes (Thamnophis sirtalis)
K. Gendreau, M. Hague, C. Feldman, E. Brodie, E. Brodie, and J. McGlothlin. Heredity, 124 (5): 647--657 (May 1, 2020)
22 days ago by @peter.ralph
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coevolution
garter_snakes
ion_channels
tetrodotoxin
coevolutiongarter_snakesion_channelstetrodotoxin
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1The effect of terrain on the fine-scale genetic diversity of sub-Antarctic Collembola: A landscape genetics approach
D. Monsanto, D. Hedding, S. Durand, S. Parbhu, M. Adair, A. Emami-Khoyi, P. Teske, and B. Jansen van Vuuren. Ecology and evolution, 14 (6): e11519--e11519 (June 2024)
27 days ago by @peter.ralph
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collembola
landscape_genetics
spatial_heterogeneity
collembolalandscape_geneticsspatial_heterogeneity
(0)
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1Leks and hilltopping in insects
J. Alcock. Journal of Natural History, 21 (2): 319--328 (1987)
a month ago by @peter.ralph
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leks
mate_finding
spatial_demography
leksmate_findingspatial_demography
(0)
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1Genetic influences on male and female variance in reproductive success and implications for the recovery of severely endangered mountain caribou
S. McFarlane, M. Manseau, A. Flasko, R. Horn, N. Arnason, L. Neufeld, M. Bradley, and P. Wilson. Global Ecology and Conservation, (2018)
a month ago by @peter.ralph
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caribou
close_kin
pedigrees
spatial_demography
caribouclose_kinpedigreesspatial_demography
(0)
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1Novel multilayer network analysis to assess variation in the spatial co-occurrences of close kin in wild caribou populations
T. Jones, M. Manseau, B. Merriell, G. Pittoello, D. Hervieux, and P. Wilson. Global Ecology and Conservation, (2023)
a month ago by @peter.ralph
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caribou
close_kin
pedigrees
spatial_demography
spatial_movement
caribouclose_kinpedigreesspatial_demographyspatial_movement
(0)
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1Aster Models for Life History Analysis
C. Geyer, S. Wagenius, and R. Shaw. Biometrika, 94 (2): 415--426 (2007)
a month ago by @peter.ralph
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GLM
aster_models
life_history
statistics
survival_analysis
GLMaster_modelslife_historystatisticssurvival_analysis
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1Juvenile survival increases with dispersal distance and varies across years: 15 years of evidence in a prairie perennial
L. Richardson, S. Nordstrom, A. Waananen, R. Thoen, A. Dykstra, G. Kiefer, D. Mullett, E. Eichenberger, R. Shaw, and S. Wagenius. Ecology, n/a (n/a): e4331 (2024)
a month ago by @peter.ralph
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Echinacea
density_dependence
dispersal
Echinaceadensity_dependencedispersal
(0)
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1Application of modern coexistence theory to rare plant restoration provides early indication of restoration trajectories
L. Aoyama, L. Shoemaker, B. Gilbert, S. Collinge, A. Faist, N. Shackelford, V. Temperton, G. Barabás, L. Larios, E. Ladouceur and 3 other author(s). Ecological Applications, 32 (7): e2649 (2022)
a month ago by @peter.ralph
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Beverton-Holt
annual_plant_model
coexistence
coexistence_theory
restoration
Beverton-Holtannual_plant_modelcoexistencecoexistence_theoryrestoration
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1Birth–death symmetry in the evolution of a social trait
P. Taylor. Journal of Evolutionary Biology, 23 (12): 2569-2578 (December 2010)
a month ago by @peter.ralph
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birth_death_processes
life_cycle
trait_evolution
birth_death_processeslife_cycletrait_evolution
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1Identity-by-descent segments in large samples
S. Temple, and E. Thompson. bioRxiv, (2024)
a month ago by @peter.ralph
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IBD
identity_by_descent
relatedness
IBDidentity_by_descentrelatedness
(0)
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1Female newts (Taricha granulosa) produce tetrodotoxin laden eggs after long term captivity
B. Gall, A. Stokes, S. French, E. Brodie, and E. Brodie. Toxicon, 60 (6): 1057-1062 (2012)
a month ago by @peter.ralph
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newts
tetrodotoxin
newtstetrodotoxin
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1Tetrodotoxin levels in lab-reared Rough-Skinned Newts (Taricha granulosa) after 3 years and comparison to wild-caught juveniles
B. Gall, A. Stokes, E. Brodie, and E. Brodie. Toxicon, (2022)
a month ago by @peter.ralph
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newts
tetrodotoxin
newtstetrodotoxin
(0)
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1Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance
J. McGlothlin, M. Kobiela, C. Feldman, T. Castoe, S. Geffeney, C. Hanifin, G. Toledo, F. Vonk, M. Richardson, E. Brodie and 2 other author(s). Current Biology, 26 (12): 1616-1621 (2016)
a month ago by @peter.ralph
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garter_snakes
molecular_mechanisms
paralogs
tetrodotoxin
garter_snakesmolecular_mechanismsparalogstetrodotoxin
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1Predator-Prey Arms Races: Asymmetrical selection on predators and prey may be reduced when prey are dangerous
E. Brodie II, and E. Brodie Jr.. BioScience, 49 (7): 557-568 (July 1999)
a month ago by @peter.ralph
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arms_race
coevolution
newt-snake
review
arms_racecoevolutionnewt-snakereview
(0)
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1Coevolution with toxic prey produces functional trade-offs in sodium channels of predatory snakes
R. del Carlo, J. Reimche, H. Moniz, M. Hague, S. Agarwal, E. Brodie, E. Brodie, N. Leblanc, and C. Feldman. (February 2024)
a month ago by @peter.ralph
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garter_snakes
molecular_mechanisms
tetrodotoxin
tradeoffs
garter_snakesmolecular_mechanismstetrodotoxintradeoffs
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1Course and timing of the homing migration in the newt Taricha rivularis
V. Twitty, D. Grant, and O. Anderson. Proceedings of the National Academy of Sciences, 56 (3): 864-871 (1966)
a month ago by @peter.ralph
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dispersal
dispersal_estimation
home_range
newts
dispersaldispersal_estimationhome_rangenewts
(0)
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2Phenotypic Mismatches Reveal Escape from Arms-Race Coevolution
C. Hanifin, E. Brodie, and E. Brodie. PLoS Biology, 6 (3): e60 (March 2008)
2 months ago by @peter.ralph
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coevolution
garter_snakes
geographic_mosaic
newts
tetrodotoxin
coevolutiongarter_snakesgeographic_mosaicnewtstetrodotoxin
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1Genetic architecture of a feeding adaptation: garter snake (Thamnophis) resistance to tetrodotoxin bearing prey
C. Feldman, E. Brodie, E. Brodie, and M. Pfrender. Proceedings of the Royal Society B: Biological Sciences, 277 (1698): 3317--3325 (November 2010)
2 months ago by @peter.ralph
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garter_snakes
molecular_mechanisms
parallel_adaptation
tetrodotoxin
garter_snakesmolecular_mechanismsparallel_adaptationtetrodotoxin
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1Evolutionary diversification of TTX-resistant sodium channels in a predator--prey interaction
S. Geffeney, E. Fujimoto, E. Brodie, E. Brodie, and P. Ruben. Nature, 434 (7034): 759--763 (April 2005)
2 months ago by @peter.ralph
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garter_snakes
ion_channels
tetrodotoxin
garter_snakesion_channelstetrodotoxin
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1Convergent adaptation to dangerous prey proceeds through the same first-step mutation in the garter snake Thamnophis sirtalis
M. Hague, C. Feldman, E. Brodie Jr., and E. Brodie III. Evolution, 71 (6): 1504-1518 (2017)
2 months ago by @peter.ralph
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convergent_evolution
garter_snakes
ion_channels
tetrodotoxin
convergent_evolutiongarter_snakesion_channelstetrodotoxin
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1Costs of exploiting poisonous prey: Evolutionary trade-offs in a predator-prey arms race
E. Brodie III, and E. Brodie Jr.. Evolution, 53 (2): 626-631 (1999)
2 months ago by @peter.ralph
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coevolution
garter_snakes
newts
tetrodotoxin
tradeoffs
coevolutiongarter_snakesnewtstetrodotoxintradeoffs
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1Parallel Evolution of Tetrodotoxin Resistance in Three Voltage-Gated Sodium Channel Genes in the Garter Snake Thamnophis sirtalis
J. McGlothlin, J. Chuckalovcak, D. Janes, S. Edwards, C. Feldman, J. Brodie, Edmund D., M. Pfrender, and I. Brodie, Edmund D.. Molecular Biology and Evolution, 31 (11): 2836-2846 (August 2014)
2 months ago by @peter.ralph
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coevolution
garter_snakes
ion_channels
parallel_adaptation
tetrodotoxin
coevolutiongarter_snakesion_channelsparallel_adaptationtetrodotoxin
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1Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes
C. Feldman, E. Brodie, E. Brodie, and M. Pfrender. Proceedings of the National Academy of Sciences, 109 (12): 4556--4561 (March 2012)
2 months ago by @peter.ralph
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convergent_evolution
garter_snakes
molecular_mechanisms
tetrodotoxin
convergent_evolutiongarter_snakesmolecular_mechanismstetrodotoxin
(0)
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1Phenotypic outcomes of predator–prey coevolution are predicted by landscape variation in climate and community composition
A. Gilbert, S. Cabrera, M. Hague, A. Stokes, C. Feldman, C. Hanifin, E. Brodie Jr, and E. Brodie III. Functional Ecology, 37 (8): 2170-2180 (2023)
2 months ago by @peter.ralph
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coevolution
garter_snakes
local_adaptation
newt-snake
newts
tetrodotoxin
coevolutiongarter_snakeslocal_adaptationnewt-snakenewtstetrodotoxin
(0)
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1Where Does All the Poison Go? Investigating Toxicokinetics of Newt (Taricha) Tetrodotoxin (TTX) in Garter Snakes (Thamnophis)
K. Robinson, H. Moniz, A. Stokes, and C. Feldman. Journal of Chemical Ecology, (Jun 6, 2024)
2 months ago by @peter.ralph
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garter_snakes
newt-snake
tetrodotoxin
toxicokinetics
garter_snakesnewt-snaketetrodotoxintoxicokinetics
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1The Brownian Spatial Coalescent
P. Koepernik. (2024)
2 months ago by @peter.ralph
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exchangeability
spatial_coalescent
exchangeabilityspatial_coalescent
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1Is there a correlation between abundance and environmental suitability derived from ecological niche modelling? A meta-analysis
M. Weber, R. Stevens, J. Diniz-Filho, and C. Grelle. Ecography, 40 (7): 817-828 (2017)
2 months ago by @peter.ralph
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niche_modeling
review
niche_modelingreview
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1Estimating scale-specific and localized spatial patterns in allele frequency
J. Lasky, M. Takou, D. Gamba, and T. Keitt. Genetics, (May 2024)
2 months ago by @peter.ralph
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spatial_statistics
wavelets
spatial_statisticswavelets
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1Effects of linkage on rates of molecular evolution
C. Birky, Jr, and J. Walsh. Proceedings of the National Academy of Sciences of the United States of America, 85 (17): 6414--6418 (September 1988)
3 months ago by @peter.ralph
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linked_selection
molecular_evolution
population_genetics
linked_selectionmolecular_evolutionpopulation_genetics
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1Genomic signatures of selection at linked sites: unifying the disparity among species
A. Cutter, and B. Payseur. Nature Reviews Genetics, 14 (4): 262--274 (Apr 1, 2013)
3 months ago by @peter.ralph
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linked_selection
review
linked_selectionreview
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1Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
M. Kimura. Nature, 267 (5608): 275--276 (May 1977)
3 months ago by @peter.ralph
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1The population genetics of dN/dS
S. Kryazhimskiy, and J. Plotkin. PLoS genetics, 4 (12): e1000304--e1000304 (December 2008)
3 months ago by @peter.ralph
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1A Mechanical Model for the Study of Population Dynamics
O. Pearson. Ecology, 41 (3): 494--508 (1960)
3 months ago by @peter.ralph
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ecology
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1Multivariate $t$-Distributions and Their Applications
S. Kotz, and S. Nadarajah. Cambridge University Press, Cambridge, (2004)
3 months ago by @peter.ralph
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probability_distributions
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1Estimation of spatial demographic maps from polymorphism data using a neural network
C. Smith, G. Patterson, P. Ralph, and A. Kern. bioRxiv, (2024)
4 months ago by @peter.ralph
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1Dispersal inference from population genetic variation using a convolutional neural network
C. Smith, S. Tittes, P. Ralph, and A. Kern. Genetics, 224 (2): iyad068 (April 2023)
4 months ago by @peter.ralph
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3Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
S. Ramachandran, O. Deshpande, C. Roseman, N. Rosenberg, M. Feldman, and L. Cavalli-Sforza. Proceedings of the National Academy of Sciences, 102 (44): 15942-15947 (2005)
4 months ago by @peter.ralph
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1Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data
C. Battey, P. Ralph, and A. Kern. Genetics, 215 (1): 193-214 (May 2020)
4 months ago by @peter.ralph
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1Evaluation of methods for estimating coalescence times using ancestral recombination graphs
D. Brandt, X. Wei, Y. Deng, A. Vaughn, and R. Nielsen. Genetics, 221 (1): iyac044 (2022)
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1The distribution of waiting distances in ancestral recombination graphs
Y. Deng, Y. Song, and R. Nielsen. Theoretical population biology, (October 2021)
4 months ago by @peter.ralph
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2Differential Fertility in Population Genetics Models
W. Bodmer. Genetics, 51 (3): 411--424 (March 1965)
5 months ago by @peter.ralph
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1Continuous selective models
T. Nagylaki, and J. Crow. Theoretical Population Biology, 5 (2): 257-283 (1974)
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3European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
M. Tine, H. Kuhl, P. Gagnaire, B. Louro, E. Desmarais, R. Martins, J. Hecht, F. Knaust, K. Belkhir, S. Klages and 11 other author(s). Nature Communications, 5 (1): 5770 (Dec 23, 2014)
5 months ago by @peter.ralph
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1A scalable estimator of SNP heritability for biobank-scale data
Y. Wu, and S. Sankararaman. Bioinformatics (Oxford, England), 34 (13): i187--i194 (July 2018)
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1Resource competition and community structure
D. Tilman. Princeton University Press, (1982)
6 months ago by @peter.ralph
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1Integrated population models: Model assumptions and inference
T. Riecke, P. Williams, T. Behnke, D. Gibson, A. Leach, B. Sedinger, P. Street, and J. Sedinger. Methods in Ecology and Evolution, 10 (7): 1072-1082 (2019)
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1An integrated population model for bird monitoring in North America
F. Ahrestani, J. Saracco, J. Sauer, K. Pardieck, and J. Royle. Ecological Applications, 27 (3): 916-924 (2017)
6 months ago by @peter.ralph
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1Synthesizing multiple data types for biological conservation using integrated population models
E. Zipkin, and S. Saunders. Biological Conservation, (2018)
6 months ago by @peter.ralph
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1An integrated path for spatial capture-recapture and animal movement modeling
B. McClintock, B. Abrahms, R. Chandler, P. Conn, S. Converse, R. Emmet, B. Gardner, N. Hostetter, and D. Johnson. Ecology, 103 (10): e3473 (2022)
6 months ago by @peter.ralph
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1Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring
R. Bischof, C. Milleret, P. Dupont, J. Chipperfield, M. Tourani, A. Ordiz, P. de Valpine, D. Turek, J. Royle, O. Gimenez and 5 other author(s). Proceedings of the National Academy of Sciences, 117 (48): 30531-30538 (2020)
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1IPM$^2$: toward better understanding and forecasting of population dynamics
F. Plard, D. Turek, M. Grüebler, and M. Schaub. Ecological Monographs, 89 (3): e01364 (2019)
6 months ago by @peter.ralph
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1Integrated population models: powerful methods to embed individual processes in population dynamics models
F. Plard, R. Fay, M. Kéry, A. Cohas, and M. Schaub. Ecology, 100 (6): e02715 (2019)
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1Spatially explicit integrated population models
R. Chandler, and J. Clark. Methods in Ecology and Evolution, 5 (12): 1351-1360 (2014)
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1The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics
A. Lewanski, M. Grundler, and G. Bradburd. PLOS Genetics, 20 (1): 1-24 (January 2024)
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1Stochastic Population Dynamics in Ecology and Conservation
R. Lande, S. Engen, and B. Saether. Oxford University Press, (April 2003)
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1Resource-explicit interactions in spatial population models
S. Champer, B. Chae, B. Haller, J. Champer, and P. Messer. bioRxiv, (2024)
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1Matrix population models
H. Caswell. Sinauer Sunderland, MA, (2000)
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1Predicting Population Dynamics from the Properties of Individuals: A Cross-Level Test of Dynamic Energy Budget Theory.
B. Martin, T. Jager, R. Nisbet, T. Preuss, and V. Grimm. The American Naturalist, 181 (4): 506-519 (2013)
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1Persistence and extinction for stochastic ecological models with internal and external variables
M. Benaïm, and S. Schreiber. Journal of Mathematical Biology, 79 (1): 393--431 (Jul 1, 2019)
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1Census error and the detection of density dependence
R. Freckleton, A. Watkinson, R. Green, and W. Sutherland. Journal of Animal Ecology, 75 (4): 837-851 (2006)
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1Persistence for stochastic difference equations: a mini-review
S. Schreiber. Journal of Difference Equations and Applications, 18 (8): 1381-1403 (2012)
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2Random Dispersal in Theoretical Populations
J. Skellam. Biometrika, 38 (1/2): 196--218 (1951)
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1On the Mechanistic Derivation of Various Discrete-Time Population Models
H. Eskola, and S. Geritz. Bulletin of Mathematical Biology, 69 (1): 329--346 (Jan 1, 2007)
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1Density dependence and stochastic variation in a newly established population of a small songbird
B. Sæther, S. Engen, R. Lande, C. Both, and M. Visser. Oikos, 99 (2): 331-337 (2002)
6 months ago by @peter.ralph
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1Estimating density dependence from population time series using demographic theory and life-history data
R. Lande, S. Engen, B. Saether, F. Filli, E. Matthysen, and H. Weimerskirch. The American Naturalist, 159 (4): 321--337 (April 2002)
6 months ago by @peter.ralph
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1Estimating the functional form for the density dependence from life history data
T. Coulson, T. Ezard, F. Pelletier, G. Tavecchia, N. Stenseth, D. Childs, J. Pilkington, J. Pemberton, L. Kruuk, T. Clutton-Brock and 1 other author(s). Ecology, 89 (6): 1661-1674 (2008)
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1Spatially Explicit Population Models: Current Forms and Future Uses
J. Dunning Jr, D. Stewart, B. Danielson, B. Noon, T. Root, R. Lamberson, and E. Stevens. Ecological Applications, 5 (1): 3-11 (1995)
6 months ago by @peter.ralph
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1Making Predictions in a Changing World: The Benefits of Individual-Based Ecology
R. Stillman, S. Railsback, J. Giske, U. Berger, and V. Grimm. Bioscience, 65 (2): 140--150 (February 2015)
6 months ago by @peter.ralph
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1“It's ok -- Not everyone can be good at math”: Instructors with an entity theory comfort (and demotivate) students
A. Rattan, C. Good, and C. Dweck. Journal of Experimental Social Psychology, 48 (3): 731-737 (2012)
6 months ago by @peter.ralph
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2Methodological Issues of Spatial Agent-Based Models
S. Manson, L. An, K. Clarke, A. Heppenstall, J. Koch, B. Krzyzanowski, F. Morgan, D. O’Sullivan, B. Runck, E. Shook and 1 other author(s). Journal of Artificial Societies and Social Simulation, (2020)
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1Landscape Genetics of Plants: Challenges and Opportunities
M. Cruzan, and E. Hendrickson. Plant Communications, 1 (6): 100100 (2020)
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1Outstanding Challenges in the Transferability of Ecological Models
K. Yates, P. Bouchet, M. Caley, K. Mengersen, C. Randin, S. Parnell, A. Fielding, A. Bamford, S. Ban, A. Barbosa and 40 other author(s). Trends in Ecology & Evolution, 33 (10): 790--802 (October 2018)
6 months ago by @peter.ralph
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1Niche analysis and tree species introduction
T. Booth, H. Nix, M. Hutchinson, and T. Jovanic. Forest Ecology and Management, 23 (1): 47-59 (1988)
6 months ago by @peter.ralph
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1A practical overview of transferability in species distribution modeling
W. Werkowska, A. Márquez, R. Real, and P. Acevedo. Environmental Reviews, 25 (1): 127-133 (2017)
6 months ago by @peter.ralph
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