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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan, H. Sofia, C. Hutter, G. Getz, D. Wheeler, L. Ding, S. Caesar-Johnson, J. Demchok, I. Felau, M. Kasapi, M. Ferguson, C. Hutter, H. Sofia, R. Tarnuzzer, Z. Wang, L. Yang, J. Zenklusen, J. Zhang, S. Chudamani, J. Liu, L. Lolla, R. Naresh, T. Pihl, Q. Sun, Y. Wan, Y. Wu, J. Cho, T. DeFreitas, S. Frazer, N. Gehlenborg, G. Getz, D. Heiman, J. Kim, M. Lawrence, P. Lin, S. Meier, M. Noble, G. Saksena, D. Voet, H. Zhang, B. Bernard, N. Chambwe, V. Dhankani, T. Knijnenburg, R. Kramer, K. Leinonen, Y. Liu, M. Miller, S. Reynolds, I. Shmulevich, V. Thorsson, W. Zhang, R. Akbani, B. Broom, A. Hegde, Z. Ju, R. Kanchi, A. Korkut, J. Li, H. Liang, S. Ling, W. Liu, Y. Lu, G. Mills, K. Ng, A. Rao, M. Ryan, J. Wang, J. Weinstein, J. Zhang, A. Abeshouse, J. Armenia, D. Chakravarty, W. Chatila, I. de Bruijn, J. Gao, B. Gross, Z. Heins, R. Kundra, K. La, M. Ladanyi, A. Luna, M. Nissan, A. Ochoa, S. Phillips, E. Reznik, F. Sanchez-Vega, C. Sander, N. Schultz, R. Sheridan, S. Sumer, Y. Sun, B. Taylor, J. Wang, H. Zhang, P. Anur, M. Peto, P. Spellman, C. Benz, J. Stuart, C. Wong, C. Yau, D. Hayes, Parker, M. Wilkerson, A. Ally, M. Balasundaram, R. Bowlby, D. Brooks, R. Carlsen, E. Chuah, N. Dhalla, R. Holt, S. Jones, K. Kasaian, D. Lee, Y. Ma, M. Marra, M. Mayo, R. Moore, A. Mungall, K. Mungall, A. Robertson, S. Sadeghi, J. Schein, P. Sipahimalani, A. Tam, N. Thiessen, K. Tse, T. Wong, A. Berger, R. Beroukhim, A. Cherniack, C. Cibulskis, S. Gabriel, G. Gao, G. Ha, M. Meyerson, S. Schumacher, J. Shih, M. Kucherlapati, R. Kucherlapati, S. Baylin, L. Cope, L. Danilova, M. Bootwalla, P. Lai, D. Maglinte, D. Van Den Berg, D. Weisenberger, J. Auman, S. Balu, T. Bodenheimer, C. Fan, K. Hoadley, A. Hoyle, S. Jefferys, C. Jones, S. Meng, P. Mieczkowski, L. Mose, A. Perou, C. Perou, J. Roach, Y. Shi, J. Simons, T. Skelly, M. Soloway, D. Tan, U. Veluvolu, H. Fan, T. Hinoue, P. Laird, H. Shen, W. Zhou, M. Bellair, K. Chang, K. Covington, C. Creighton, H. Dinh, H. Doddapaneni, L. Donehower, J. Drummond, R. Gibbs, R. Glenn, W. Hale, Y. Han, J. Hu, V. Korchina, S. Lee, L. Lewis, W. Li, X. Liu, M. Morgan, D. Morton, D. Muzny, J. Santibanez, M. Sheth, E. Shinbrot, L. Wang, M. Wang, D. Wheeler, L. Xi, F. Zhao, J. Hess, E. Appelbaum, M. Bailey, M. Cordes, L. Ding, C. Fronick, L. Fulton, R. Fulton, C. Kandoth, E. Mardis, M. McLellan, C. Miller, H. Schmidt, R. Wilson, D. Crain, E. Curley, J. Gardner, K. Lau, D. Mallery, S. Morris, J. Paulauskis, R. Penny, C. Shelton, T. Shelton, M. Sherman, E. Thompson, P. Yena, J. Bowen, J. Gastier-Foster, M. Gerken, K. Leraas, T. Lichtenberg, N. Ramirez, L. Wise, E. Zmuda, N. Corcoran, T. Costello, C. Hovens, A. Carvalho, A. de Carvalho, J. Fregnani, A. Longatto-Filho, R. Reis, C. Scapulatempo-Neto, H. Silveira, D. Vidal, A. Burnette, J. Eschbacher, B. Hermes, A. Noss, R. Singh, M. Anderson, P. Castro, M. Ittmann, D. Huntsman, B. Kohl, X. Le, R. Thorp, C. Andry, E. Duffy, V. Lyadov, O. Paklina, G. Setdikova, A. Shabunin, M. Tavobilov, C. McPherson, R. Warnick, R. Berkowitz, D. Cramer, C. Feltmate, N. Horowitz, A. Kibel, M. Muto, C. Raut, A. Malykh, J. Barnholtz-Sloan, W. Barrett, K. Devine, J. Fulop, Q. Ostrom, K. Shimmel, Y. Wolinsky, A. Sloan, A. De Rose, F. Giuliante, M. Goodman, B. Karlan, C. Hagedorn, J. Eckman, J. Harr, J. Myers, K. Tucker, L. Zach, B. Deyarmin, H. Hu, L. Kvecher, C. Larson, R. Mural, S. Somiari, A. Vicha, T. Zelinka, J. Bennett, M. Iacocca, B. Rabeno, P. Swanson, M. Latour, L. Lacombe, B. Têtu, A. Bergeron, M. McGraw, S. Staugaitis, J. Chabot, H. Hibshoosh, A. Sepulveda, T. Su, T. Wang, O. Potapova, O. Voronina, L. Desjardins, O. Mariani, S. Roman-Roman, X. Sastre, M. Stern, F. Cheng, S. Signoretti, A. Berchuck, D. Bigner, E. Lipp, J. Marks, S. McCall, R. McLendon, A. Secord, A. Sharp, M. Behera, D. Brat, A. Chen, K. Delman, S. Force, F. Khuri, K. Magliocca, S. Maithel, J. Olson, T. Owonikoko, A. Pickens, S. Ramalingam, D. Shin, G. Sica, E. Van Meir, H. Zhang, W. Eijckenboom, A. Gillis, E. Korpershoek, L. Looijenga, W. Oosterhuis, H. Stoop, K. van Kessel, E. Zwarthoff, C. Calatozzolo, L. Cuppini, S. Cuzzubbo, F. DiMeco, G. Finocchiaro, L. Mattei, A. Perin, B. Pollo, C. Chen, J. Houck, P. Lohavanichbutr, A. Hartmann, C. Stoehr, R. Stoehr, H. Taubert, S. Wach, B. Wullich, W. Kycler, D. Murawa, M. Wiznerowicz, K. Chung, W. Edenfield, J. Martin, E. Baudin, G. Bubley, R. Bueno, A. De Rienzo, W. Richards, S. Kalkanis, T. Mikkelsen, H. Noushmehr, L. Scarpace, N. Girard, M. Aymerich, E. Campo, E. Giné, A. Guillermo, N. Van Bang, P. Hanh, B. Phu, Y. Tang, H. Colman, K. Evason, P. Dottino, J. Martignetti, H. Gabra, H. Juhl, T. Akeredolu, S. Stepa, D. Hoon, K. Ahn, K. Kang, F. Beuschlein, A. Breggia, M. Birrer, D. Bell, M. Borad, A. Bryce, E. Castle, V. Chandan, J. Cheville, J. Copland, M. Farnell, T. Flotte, N. Giama, T. Ho, M. Kendrick, J. Kocher, K. Kopp, C. Moser, D. Nagorney, D. O’Brien, B. O’Neill, T. Patel, G. Petersen, F. Que, M. Rivera, L. Roberts, R. Smallridge, T. Smyrk, M. Stanton, R. Thompson, M. Torbenson, J. Yang, L. Zhang, F. Brimo, J. Ajani, A. Angulo Gonzalez, C. Behrens, J. Bondaruk, R. Broaddus, B. Czerniak, B. Esmaeli, J. Fujimoto, J. Gershenwald, C. Guo, A. Lazar, C. Logothetis, F. Meric-Bernstam, C. Moran, L. Ramondetta, D. Rice, A. Sood, P. Tamboli, T. Thompson, P. Troncoso, A. Tsao, I. Wistuba, C. Carter, L. Haydu, P. Hersey, V. Jakrot, H. Kakavand, R. Kefford, K. Lee, G. Long, G. Mann, M. Quinn, R. Saw, R. Scolyer, K. Shannon, A. Spillane, J. Stretch, M. Synott, J. Thompson, J. Wilmott, H. Al-Ahmadie, T. Chan, R. Ghossein, A. Gopalan, D. Levine, V. Reuter, S. Singer, B. Singh, N. Tien, T. Broudy, C. Mirsaidi, P. Nair, P. Drwiega, J. Miller, J. Smith, H. Zaren, J. Park, N. Hung, E. Kebebew, W. Linehan, A. Metwalli, K. Pacak, P. Pinto, M. Schiffman, L. Schmidt, C. Vocke, N. Wentzensen, R. Worrell, H. Yang, M. Moncrieff, C. Goparaju, J. Melamed, H. Pass, N. Botnariuc, I. Caraman, M. Cernat, I. Chemencedji, A. Clipca, S. Doruc, G. Gorincioi, S. Mura, M. Pirtac, I. Stancul, D. Tcaciuc, M. Albert, I. Alexopoulou, A. Arnaout, J. Bartlett, J. Engel, S. Gilbert, J. Parfitt, H. Sekhon, G. Thomas, D. Rassl, R. Rintoul, C. Bifulco, R. Tamakawa, W. Urba, N. Hayward, H. Timmers, A. Antenucci, F. Facciolo, G. Grazi, M. Marino, R. Merola, R. de Krijger, A. Gimenez-Roqueplo, A. Piché, S. Chevalier, G. McKercher, K. Birsoy, G. Barnett, C. Brewer, C. Farver, T. Naska, N. Pennell, D. Raymond, C. Schilero, K. Smolenski, F. Williams, C. Morrison, J. Borgia, M. Liptay, M. Pool, C. Seder, K. Junker, L. Omberg, M. Dinkin, G. Manikhas, D. Alvaro, M. Bragazzi, V. Cardinale, G. Carpino, E. Gaudio, D. Chesla, S. Cottingham, M. Dubina, F. Moiseenko, R. Dhanasekaran, K. Becker, K. Janssen, J. Slotta-Huspenina, M. Abdel-Rahman, D. Aziz, S. Bell, C. Cebulla, A. Davis, R. Duell, J. Elder, J. Hilty, B. Kumar, J. Lang, N. Lehman, R. Mandt, P. Nguyen, R. Pilarski, K. Rai, L. Schoenfield, K. Senecal, P. Wakely, P. Hansen, R. Lechan, J. Powers, A. Tischler, W. Grizzle, K. Sexton, A. Kastl, J. Henderson, S. Porten, J. Waldmann, M. Fassnacht, S. Asa, D. Schadendorf, M. Couce, M. Graefen, H. Huland, G. Sauter, T. Schlomm, R. Simon, P. Tennstedt, O. Olabode, M. Nelson, O. Bathe, P. Carroll, J. Chan, P. Disaia, P. Glenn, R. Kelley, C. Landen, J. Phillips, M. Prados, J. Simko, K. Smith-McCune, S. VandenBerg, K. Roggin, A. Fehrenbach, A. Kendler, S. Sifri, R. Steele, A. Jimeno, F. Carey, I. Forgie, M. Mannelli, M. Carney, B. Hernandez, B. Campos, C. Herold-Mende, C. Jungk, A. Unterberg, A. von Deimling, A. Bossler, J. Galbraith, L. Jacobus, M. Knudson, T. Knutson, D. Ma, M. Milhem, R. Sigmund, A. Godwin, R. Madan, H. Rosenthal, C. Adebamowo, S. Adebamowo, A. Boussioutas, D. Beer, T. Giordano, A. Mes-Masson, F. Saad, T. Bocklage, L. Landrum, R. Mannel, K. Moore, K. Moxley, R. Postier, J. Walker, R. Zuna, M. Feldman, F. Valdivieso, R. Dhir, J. Luketich, E. Mora Pinero, M. Quintero-Aguilo, C. Carlotti, J. Dos Santos, R. Kemp, A. Sankarankuty, D. Tirapelli, J. Catto, K. Agnew, E. Swisher, J. Creaney, B. Robinson, C. Shelley, E. Godwin, S. Kendall, C. Shipman, C. Bradford, T. Carey, A. Haddad, J. Moyer, L. Peterson, M. Prince, L. Rozek, G. Wolf, R. Bowman, K. Fong, I. Yang, R. Korst, W. Rathmell, J. Fantacone-Campbell, J. Hooke, A. Kovatich, C. Shriver, J. DiPersio, B. Drake, R. Govindan, S. Heath, T. Ley, B. Van Tine, P. Westervelt, M. Rubin, J. Lee, N. Aredes, and A. Mariamidze. Cell Systems, 6 (3): 271--281.e7 (March 2018)
DOI: 10.1016/j.cels.2018.03.002

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Li Ding

Ding Ding

Li Li

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)Towards the Explanation of Workflows.J. Michaelis, L. Ding, and D. McGuinness. ExaCt, page 60-71. (2009)Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin.K. Hoadley, C. Yau, D. Wolf, A. Cherniack, D. Tamborero, S. Ng, M. Leiserson, B. Niu, M. McLellan, V. Uzunangelov and 23 other author(s). Cell, (August 2014)Social Physics and China's Population Migration.Y. lin Wang, and D. Li. Complex (2), volume 5 of Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, page 2283-2292. Springer, (2009)DNA sequencing of a cytogenetically normal acute myeloid leukaemia genomeT. Ley, E. Mardis, L. Ding, B. Fulton, M. McLellan, K. Chen, D. Dooling, B. Dunford-Shore, S. McGrath, M. Hickenbotham and 38 other author(s). Nature, 456 (7218): 66--72 (November 2008)Performance modeling of resonant tunneling based RAMs.H. Zhang, P. Mazumder, L. Ding, and K. Yang. ISCAS (4), page 900-903. IEEE, (2003)Novel macromodeling for on-chip RC/RLC interconnects.Q. Xu, P. Mazumder, and L. Ding. ISCAS (4), page 189-192. IEEE, (2002)Supervised Bayesian sparse coding for classification.J. Xu, L. Ding, and S. Sun. IJCNN, page 319-326. IEEE, (2014)Social Networking on the Semantic WebT. Finin, L. Ding, and L. Zou. Learning Organization Journal, special issue on Ubiquitous Business Intelligence, (2005)

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Li Ding

Ding Ding

Ding Ding

Li Li

Li Li

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Ding, Li"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Li Ding

Ding Ding

Ding Ding

Li Li

Li Li

Other publications of authors with the same name

Disambiguation

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URL
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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines